species:   Opsin
pid:       PID1970
parent:    n_os_milR_16
paralog:   
locus:     JAAVMX010000007.1:651491-651544
matures:   ['UACCAUGUCGUCGAGGGC', 'CUCCCUCGUCUCCGUGUUUGC']
srr:       SRR12952899
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952899.cram JAAVMX010000007.1:651491-651544

0 out of bounds
4 alignments
3 proper strand
3 stranded perfect matches

    ************************ *********************    
UCUUGGGCUCCCUCGUCUCCGUGUUUGCGUAUACCAUGUCGUCGAGGGCCGAGA
((((((...((((((.(..((((...........))))..).))))))))))))
-------------------------------UACCAUGUCGUCGAGGGC----- l=18 a=1 c
-------CUCCCUCGUCUCCGUGUUUGC-------------------------- l=21 a=0 c*
-------------------------------UACCAUGUCGUCGAGGGCC---- l=19 a=2 ma
------GCUCCCUCGUCUCCGUGUUUGC-------------------------- l=22 a=0 ma*

-------------------------------UACCAUGUCGUCGAGGGC----- l=18 a=1 (c)
-------------------------------UACCAUGUCGUCGAGGGCC---- l=19 a=2 (ma)

mb-00010
ax-1001101
ku-01
ss-101010101110
fn-001
